Publications

03/17/10

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Total 61 publications

 

Journal Papers ( 21)

  • M. Zhu, Guangxing Wang, and Tonny Oyana. Parallel Spatiotemporal Autocorrelation and Visualization System for Large-scale Remotely Sensed Images. Journal of Supercomputing, Springer Volume 59, Issue 1, pp. 83-103 2012
  • J. Wang and M. Zhu. Parallel Multiple Sequences Alignment with Maximum Likelihood-based Tree Construction Inference. International Journal of Computational Biology and Drug Design, Volume 3, Issue 3, pp. 226-236. Jan 2011
  • M. Zhu, S. Ding, Q. Wu, R. R. Brooks, N. S.V. Rao, and S. S. Iyengar. Fusion of Threshold Rules for Target Detection in Wireless Sensor Networks, ACM Transactions on Sensor Networks, Volume 6, Issue 2, Article 18, pp. 18-23, February 2010.
  • Q. Wu, M. Zhu, Y. Gu, and N.S.V. Rao. System Design and Algorithmic Development for Computational Steering in Distributed Environments, IEEE Transactions on Parallel and Distributed Systems, Volume 21, Issue 4, pp. 438-451, April 2010.
  • X. Cao and M. Zhu. A parallel approach toward correlation measurement for gene pairs with time-lagging expression behaviors, International Journal of Computational Biology and Drug Design, Volume 2, Issue 3, pp. 274-283, 2009.
  • M. Zhu and R. R. Brooks. Comparison of Petri Net and Finite State Machine Discrete Event Control of Distributed Surveillance Networks, International Journal of Distributed Sensor Networks Taylor & Francis 2009, Volume 5, Issue 5, pp.480-501, 2009.
  • Y. Gu, Q. Wu, M. Zhu, and N.S.V. Rao. Complexity Analysis of Pipeline Mapping Problems in Distributed Heterogeneous Networks, Special issue in International Journal of Distributed Sensor Networks, Volume 5, Issue 1, 2009.
  • Y. Lin, Q. Wu, N. S.V. Rao, and M. Zhu. Advance Bandwidth Scheduling Algorithms in Dedicated Networks, in Special issue in International Journal of Distributed Sensor Networks, Volume 5, Issue 1, 2009.
  • Q. Wu, J. Gao, Z. Chen, and M. Zhu. Pipelining Parallel Image Compositing and Delivery for Efficient Remote Visualization, Journal of Parallel and Distributed Computing (JPDC), Volume 69, Issue 3, pp. 230-238, 2009.
  • Q. Wu, M. Zhu, and N.S.V. Rao. Integration of Sensing and Computing in an Intelligent Decision Support System for Homeland Security Defense Pervasive and Mobile Computing, Pervasive and Mobile Computing Journal, Volume 5, Issue 2, pp. 182-200, April 2009.
  • Y. Yang, M. Zhu, L. Wu, and J. Zhou. Assessment of Data Processing to Improve Reliability of Microarray Experiments Using Genomic DNA Reference, BMC Genomics, 9(Suppl 2):S5 doi:10.1186/1471-2164-9-S2-S5 2008.
  • J. Yuan, M. Zhu, D. A. Lightfoot, M. J. Iqbal, and K. Meksem. In silico Comparison of Transcript Abundances During Arabidopsis thaliana and Glycine max Resistance to Fusarium virguliforme, BMC Genomics, 9(Suppl 2):S6 doi:10.1186/1471-2164-9-S2-S6, 2008.
  • M. Xu, M. Zhu, and L. Zhang. A Stable Iterative Method for Refining Discriminative Gene Clusters, BMC Genomics 2008, 9(Suppl 2):S18 doi:10.1186/1471-2164-9-S2-S18, 2008.
  • M. Zhu and Q. Wu. A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets, BMC Genomics, 9 (Suppl 1):S5 doi:10.1186/1471-2164-9-S1-S5, 2008
  • Q. Wu, J. Gao, M. Zhu, N.S.V. Rao, J. Huang, and S.S. Iyengar. Optimal Resource Utilization for Distributed Remote Visualization, IEEE Transactions on Computers, Volume 57, Issue 1, pp. 55-68, January 2008.
  • M. Zhu, Q. Wu, N.S.V. Rao, and S. S. Iyengar. Optimal Pipeline Decomposition and Adaptive Network Mapping to Support Distributed Remote Visualization, Journal of Parallel and Distributed Computing (JPDC), Volume 67, Issue 8, pp. 947-956. 2007.
  • R. Meyer, J. Yuan, J. Afzal, J. Iqbal, M Zhu, G. Garvey, and D. A. Lightfoot. Identification of Gsr1: A locus inferred to regulate gene expression in response to exogenous glutamine, Euphytica, Volume 151, Issue 3, pp. 291-302, October 2006.
  • N.S.V. Rao, S. M Carter, Q. Wu, W. R Wing, M. Zhu, A. Mezzacappa, M. Veeraraghavan and J. M Blondin. Networking for large-scale science: infrastructure, provisioning, transport and application mapping, Journal of Physics: Conference Series, Volume 16, pp. 541-545, June 2005.
  • X. Zheng, M. Veeraraghavan, N.S.V. Rao, Q. Wu, and M. Zhu. CHEETAH: Circuitswitched High-speed End-to-End Transport Architecture testbed, IEEE Communications Magazine, Volume 43, Issue 8, pp. 11-17, August 2005.
  • R.R. Brooks, M. Zhu, J. Lamb, and S.S. Iyengar. Aspect-oriented design of sensor networks, Journal of Parallel and Distributed Computing (JPDC),, Volume 64, Issue 7, pp. 853-865, July 2004.
  • Q. Wu, S.S. Iyengar, and M. Zhu. Web image retrieval using self-organizing feature map, Journal of the American Society for Information Science and Technology, Volume 52, Issue 10, pp. 868-875, August 2001.

Book Chapters (6)
  • M. Zhu, R.R. Brooks, S. Ding, Q. Wu, N.S.V. Rao, and S.S. Iyengar. Chebyshev's Inequality-based Multi-Sensor Data Fusion in Self-organizing Sensor Networks, Frontiers in Distributed Sensor Networks Second Edition, Chapter 26, R. R. Brooks and S. S. Iyengar (editors), Chapman and Hall Inc, 2011.
  • Q. Wu, M. Zhu, N. S.V. Rao, R. R. Brooks, S. S. Iyengar, and M. Meng. An integrated intelligent decision support system based on sensor and computer networks. System of Systems – Principles and Applications, Mo Jamshidi (editor), Taylor & Francis Group LLC, pp. 279-315, 2008.
  • R.R. Brooks, M. Zhu, M. Piretti, C. Griffin and S.S. Iyengar, Emergent routing and resource discovery, Disruptive Security Technologies with Mobile Code and Peer-to-Peer Networks, Chapter 11, pp. 283-305, R.R. Brooks (editor), CRC Press 2005.
  • Q. Wu, N.S.V. Rao, R.R. Brooks, S.S. Iyengar, and M. Zhu. On computational and networking problems in distributed sensor networks. Handbook of Sensor Networks: Compact Wireless and Wired Sensing Systems, M. Ilyas and I. Mahgoub (editors), CRC Press LLC, pp. 25.1-25.16, August 2004.
  • M. Zhu, R.R. Brooks, M. Pirretti, and S.S. Iyengar. Physics and Chemistry, Frontiers in Distributed Sensor Networks, Chapter 7, S.S. Iyengar and Richard R. Brooks (editors), CRC Press Inc., September 2003.
  • M. Zhu, J. Lamb, R.R. Brooks, M. Pirretti, and S.S. Iyengar. Example DSN control hierarchy, Frontiers in Distributed Sensor Networks, Chapter 8, S. S. Iyengar and R. R. Brooks (editors), CRC Press Inc., September 2003.

Conference Papers (33)
  • F. Mumba, M. Zhu, J. Ma and S. Ahmed. New Design and Implementation of a Virtual Classroom System Using Google App Engine, Proceedings of SITE 2012--Society for Information Technology & Teacher Education International Conference, Austin, Texas, USA; March 5-9, 2012
  • P. Brown, M. Zhu, Q. Wu and X. Lu. Network-Aware Data Movement Advisor, Workshop of Network aware data management Proceeding of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC11), Nov. 14th to 17th, Seattle, WA, 2011
  • Q. Wu, M. Zhu, Y. Gu, X. Lu, P. Brown, M. Reuter, and S. Miller. A Distributed Workflow Management System with Case Study of Real-life Scientific Applications, the 30th IEEE International Performance Computing and Communications Conference (IPCCC 2011), November, 17th to 19th Orlanda, FL, 2011
  • M. Zhu, F. Cao, and J. Mi. A Hybrid Mapping and Scheduling Algorithm for Distributed Workflow Applications in a Heterogeneous Computing Environment, Intelligent Distributed Computing V, Springer, SCI 382, vol. 1, pp. 117–127. The 5th International symposium on Intelligent Distributed Computing (IDC 2011) Delft, The Netherlands.  October 2011
  • F. Cao and M. Zhu. A Fault-tolerant Workflow Mapping Algorithm under End-to-end Delay Constraint, Proceeding of the Symposium on Advances of High Performance Computing and Networking (AHPCN-2011)in conjunction with the 13th IEEE international conference on High Performance Computing and Communications (HPCC-2011), pp. 575-580  Banff, Canada, September 2-4, 2011.
  • Joey Ingram and M. Zhu. GPU Accelerated Microarray Data Analysis Using Random Matrix Theory, Proceeding of The IEEE 8th International Conference on Ubiquitous Intelligence and Computing (UIC-2011) Workshop on Embedded Multi-Core computing and Applications, pp. 839-844, Banff, Canada, September 2-4, 2011
  • M. Tucker, F. Mumba, E. Miles and M Zhu, Elementary School Teachers’ Knowledge of Science Process Skills, Poster of the Mathematics and Science Partnership Program Regional Conference, San Francisco, CA, March 21-23, 2011
  • F. Mumba, M. Zhu, and C.C. Cheng, An Interactive Simulation based Virtual Classroom System using Cloud Computing Technology, In Proceedings of the SITE 2011--Society for Information Technology & Teacher Education International Conference, pp. 1~6, Nashville, Tennessee, USA; March 7-11, 2011
  • F. Mumba, V. M. Chabalengula and M. Zhu, Science Teachers Familiarity of and Interest in Computer Simulations, Animations, Visualization, Modeling and Virtual reality, In Proceedings of the SITE--Society for Information Technology & Teacher Education International Conference,Nashville, Tennessee, USA; March 7-11, 2011
  • F. Mumba, V. M. Chabalengula and M. Zhu, Partnership in Advanced Science Achievement using Computational Science, Poster of Science, Technology, Engineering and Mathematics (STEM) in Education, Queensland University of Technology, Brisbane Australia, November 26-27, 2010, Australia
  • Q. Wu, M. Zhu, X. Lu, P. Brown, Y. Lin, Y. Gu, F. Cao and M.A. Reuter. Automation and Management of Scientific Workflows in Distributed Network Environments. In Proceedings of the 6th International Workshop on System Management Techniques, Processes, and Services, in conjunction with IPDPS, Atlanta, GA, April 19, 2010
  • J. Yuan, M. Zhu, K. Meksem, P. Hart, and D. A. Lightfoot. Parallel comparative analyses of resistance pathways of Arabidopsis Thaliana and soybean (Glycine max) to fusarium Virguliforme and to deoxynivalenol of gibberella zeae. In Proceedings of the world soybean research conference VIII, Beijing China, 2009.
  • J. He, M. Zhu, and M. Wainer. Parallel sequence alignment using Graphics Processing Unit. In Proceedings of International Conference on Bioinformatics & Computational Biology BIOCOMP'09, Volume 1, pp. 96-103, July Las Vegas, 2009.
  • P. Brown, E. Fitzek, C. Li, M. Zhu, and M. Geisler. A new way to look at plant cis-regulatory elements, Joint Annual Meetings of the American Society of Plant Biologists and the Phycological Society of America, Hawaii Convention Center, Honolulu, Hawaii, July 2009.
  • P. Brown, E. Fitzek, C. Li, M. Zhu, and M. Geisler. Global discovery and functional annotation of Arabidopsis cis-regulatory elements. The 19th International Conference on Arabidopsis Research, Bioinformatics, Modeling, and Systems Biology, Montreal, Canada, July 2008.
  • J. Geisler-Lee, M. Zhu, and M. Geisler. Novel Gene Discovery in the Biosynthesis of Suberin, a Biopolymer. The 19th International Conference on Arabidopsis Research, Montreal, Canada, July 2008.
  • M. Zhu and N. K. Yadav. A Distributed System for Parallel Simulations. In Proceedings of IEEE Global Communications Conference (IEEE GLOBECOM 2008), pp. 1-5,December 1-3, New Orleans, LA, 2008.
  • Y. Gu, Q. Wu, M. Zhu, and N.S.V. Rao. Complexity analysis of pipeline mapping in heterogeneous distributed networks. In Proceedings of International Symposium on Computer and Sensor Network Systems, Zhengzhou, P.R. China, April 7-10, 2008 (ISCSNS08). Also published in International Journal of Distributed Sensor Networks, 2008.
  • Y. Lin, Q. Wu, N.S.V. Rao, and M. Zhu. Advance bandwidth scheduling algorithms in dedicated networks. In Proceedings of International Symposium on Computer and Sensor Network Systems, Zhengzhou, P.R. China, April 7-10, 2008 (ISCSNS08). Also published in International Journal of Distributed Sensor Networks, 2008.
  • Q. Wu, Y. Gu, M. Zhu, and N.S.V. Rao. Optimizing network performance of computing pipelines in distributed environments. In Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, the 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing, pp. 1-8, Miami, Florida, April 14-18, 2008.
  • M. Zhu, Q. Wu, and N.S.V. Rao. Computational monitoring and steering using network-optimized visualization and Ajax web server. In Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, pp. 1-12, Miami, Florida, April 14-18, 2008.
  • Y. Lin, Q. Wu, N.S.V. Rao, and M. Zhu. On design of scheduling algorithms for advance bandwidth reservation in dedicated networks. In Proceedings of INFOCOM High-Speed Networks Workshop, pp. 1-6, Phoenix, Arizona, April 13, 2008.
  • M. Zhu and Q. Wu. A Parallel computing approach to decipher transcription network for large-scale microarray datasets. In Proceedings of the 2007 International Conference on Bioinformatics and Computational Biology, vol. II, pp. 700-706, Las Vegas, Nevada, June 25-28, 2007.
  • Y. Yang, M. Zhu, L. Wu, and J. Zhou. Biostatistical Considerations of the Use of Genomic DNA Reference in Microarrays. In Proceedings of 7th IEEE Bioinformatics and Bioengineering (BIBE07), Boston, MA, vol. I, pp 593-600, October 2007 (First Runner-up of Best Application Paper Award).
  • J. Yuan, M. Zhu, M. Iqbal, and D. A. Lightfoot. A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg). In Proceedings of 7th IEEE Bioinformatics and Bioengineering, Boston, MA,vol. I, pp 585-592, October 2007.
  • Q. Wu, J. Gao, and M. Zhu. A scalable framework for distributed virtual reality using heterogeneous processors. The 16th International Conference on Artificial Reality and Telexistence, Lecture Notes in Computer Science, vol 1, pp. 314-323, Hangzhou, P.R. China, November 2006.
  • M. Zhu, Q. Wu, Y. Yang, and J. Zhou. A New approach to identify functional modules using random matrix theory. In Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, vol. 1, pp. 117-123, Toronto, Canada, September 2006.
  • M. Zhu, S. Ding, R.R. Brooks, Q. Wu, N.S.V. Rao, and S. S. Iyengar. Fusion of threshold rules for target detection in self-organizing sensor networks. The 9th ONR/GTRI Workshop on Target Tracking and Sensor Fusion, Gatlinburg, TN, June 2006.
  • Q. Wu, M. Zhu, and N.S.V. Rao. System design for on-line distributed computational visualization and steering. International Conference on E-learning and Games, Lecture Notes in Computer Science, vol. 3942, pp. 1121–1130, Hangzhou, China, April 2006.
  • M. Zhu, S.S. Iyengar, Q. Wu, and N.S.V. Rao. Optimal visualization pipeline decomposition and adaptive network mapping to support remote visualization. In Proceeding of the 13th Annual Mardi Gras Conference: Frontiers of Grid Applications and Technologies, Baton Rouge, LA, February 2005.
  • M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar. On optimal mapping of visualization pipeline onto linear arrangement of network nodes. In Proceedings of SPIE 2004 (International Society for Optical Engineering), Conference on Visualization and Data Analysis, vol. 5669, pp. 1-11, San Jose, CA January 2005.
  • M. Zhu, Q. Wu, N.S.V. Rao, and S.S. Iyengar. Adaptive Visualization Pipeline Decomposition and Mapping onto Computer Networks. In Proceedings of the 3rd International Conference on Image and Graphics, vol 1, pp. 402-405, Hong Kong, China, December 2004.
  • R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar. Distributed Adaptation Methods for Wireless Sensor Networks. In Proceedings of IEEE Globecom 2003, vol. 5, pp. 2967-2971, December 2003.
  • R. R. Brooks, M. Piretti, M. Zhu, and S.S. Iyengar. Adaptive routing using emergent protocols in wireless Ad Hoc Sensor Networks. In Proceedings of SPIE 48th annual meeting symposium, Advanced Signal Processing Algorithms, Architecture, and Implementation, pp.155-163, San Diego, CA, August 2003.

 

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This site was last updated 03/17/10